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1

Kinetic modeling of mammalian cell culture bioprocessing: the quest to advance biomanufacturing

Kyriakopoulos, Sarantos, Ang, Kok Siong, Lakshmanan, Meiyappan, Huang, Zhuangrong, Yoon, Seongkyu, Gunawan, Rudiyanto, Lee, Dong-Yup

Journal:

Biotechnology Journal

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

2

The Construction of Marginality of Border Areas: A Case Study of Natuna Island in Indonesia

., Marsetio, Abdullah, Irwan, ., Rudiyanto, Prasojo, Zaenuddin Hudi, Yuniar, Ririt, Ritonga, Rajab

Journal:

International Journal of u- and e- Service Science and Technology

Year:

2017

Language:

english

File:

PDF, 456 KB

english, 2017

3

Automated Near-Real-Time Mapping and Monitoring of Rice Extent, Cropping Patterns, and Growth Stages in Southeast Asia Using Sentinel-1 Time Series on a Google Earth Engine Platform

Rudiyanto,, Minasny,, Shah,, Soh,, Arif,, Setiawan,

Journal:

Year:

2019

Language:

english

File:

PDF, 14.17 MB

english, 2019

4

Open digital mapping as a cost-effective method for mapping peat thickness and assessing the carbon stock of tropical peatlands

Rudiyanto,, Minasny, Budiman, Setiawan, Budi Indra, Saptomo, Satyanto Krido, McBratney, Alex B.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.17 MB

english, 2018

5

Glycosylation Flux Analysis of Immunoglobulin G in Chinese Hamster Ovary Perfusion Cell Culture

Hutter, Sandro, Wolf, Moritz, Papili Gao, Nan, Lepori, Dario, Schweigler, Thea, Morbidelli, Massimo, Gunawan, Rudiyanto

Journal:

Year:

2018

Language:

english

File:

PDF, 4.55 MB

english, 2018

6

Estimating Distribution of Carbon Stock in Tropical Peatland Using a Combination of an Empirical Peat Depth Model and GIS

Rudiyanto,, Setiawan, Budi I., Arief, Chusnul, Saptomo, Satyanto K., Gunawan, Adrianto, Kuswarman,, Sungkono,, Indriyanto, Hendri

Journal:

Procedia Environmental Sciences

Year:

2015

Language:

english

File:

PDF, 521 KB

english, 2015

7

Energy and Exergy Analysis of Steam Power Plant in Paiton, Indonesia

Rudiyanto, Bayu, Kusuma Wardani, Tri Ajeng, Anwar, Saiful, Al Jamali, Lutfi, Prasetyo, Totok, Mukti Wibowo, Kukuh, Agung Pambudi, Nugroho, Huat Saw, Lip

Journal:

IOP Conference Series: Earth and Environmental Science

Year:

2019

Language:

english

File:

PDF, 962 KB

english, 2019

8

APEL (Anak Peduli Lingkungan) Program: Mathematics and Science Learning Experience through Natural Environmental Preservation for Grade 1 and 2 Elementary School Students

Rudiyanto,, Kurniati, Euis, Fitriani, Andhin Dyas, Rengganis, Ira, Mirawati,

Journal:

Journal of Physics Conference Series

Year:

2019

Language:

english

File:

PDF, 426 KB

english, 2019

9

The Performance of Shrouded Wind Turbine at Low Wind Speed Condition

Riyanto,, Pambudi, Nugroho Agung, Febriyanto, Rusdi, Wibowo, Kukuh Mukti, Setyawan, Nova Dany, Wardani, Nyenyep Sri, Saw, Lip Huat, Rudiyanto, Bayu

Journal:

Energy Procedia

Year:

2019

Language:

english

File:

PDF, 1.09 MB

english, 2019

10

Parameter identifiability of power-law biochemical system models

Sridharan Srinath, Rudiyanto Gunawan

Journal:

Journal of Biotechnology

Year:

2010

Language:

english

File:

PDF, 365 KB

english, 2010

11

Further results on comparison of methods for quantifying soil carbon in tropical peats

Rudiyanto,, Minasny, Budiman, Setiawan, Budi Indra

Journal:

Year:

2016

Language:

english

File:

PDF, 658 KB

english, 2016

12

Digital mapping for cost-effective and accurate prediction of the depth and carbon stocks in Indonesian peatlands

Rudiyanto,, Minasny, Budiman, Setiawan, Budi Indra, Arif, Chusnul, Saptomo, Satyanto Krido, Chadirin, Yudi

Journal:

Year:

2016

Language:

english

File:

PDF, 2.96 MB

english, 2016

13

Multi-Objective Optimization of Experiments Using Curvature and Fisher Information Matrix

Manesso, Erica, Sridharan, Srinath, Gunawan, Rudiyanto

Journal:

Year:

2017

Language:

english

File:

PDF, 351 KB

english, 2017

14

Acoustic Compressibility of Caenorhabditis elegans

Baasch, Thierry, Reichert, Peter, Lakämper, Stefan, Vertti-Quintero, Nadia, Hack, Gamuret, Casadevall i Solvas, Xavier, deMello, Andrew, Gunawan, Rudiyanto, Dual, Jürg

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 951 KB

english, 2018

15

Multiple Managers, Competing Strategies and Business Unit Performance: A Case Study of PINDAD Company, Indonesia

Prayitno, Arief, Raharja, Sam'un Jaja, Maulina, Erna, ., Rudiyanto, Muftiadi, Anang

Journal:

International Journal of Advanced Science and Technology

Year:

2017

Language:

english

File:

PDF, 435 KB

english, 2017

16

Automated Near-Real-Time Mapping and Monitoring of Rice Extent, Cropping Patterns, and Growth Stages in Southeast Asia Using Sentinel-1 Time Series on a Google Earth Engine Platform

Rudiyanto,, Minasny,, Shah,, Soh,, Arif,, Setiawan,

Journal:

Year:

2019

File:

PDF, 14.17 MB

2019

17

Optimization And Validation Of Hydrated Magnesium Silicate On Dry Washing Purification Biodiesel Using Response Surface Methodology

Rudiyanto, Bayu, Andrianto, Muhamad, Susmiati, Yuana, Agung Pambudi, Nugroho, Riyanto,

Journal:

Energy Procedia

Year:

2019

Language:

english

File:

PDF, 688 KB

english, 2019

18

Implementation of Dijkstra Algorithm and Multi-Criteria Decision-Making for Optimal Route Distribution

Rosita, Yesy Diah, Rosyida, Erly Ekayanti, Rudiyanto, Muhammad Adik

Journal:

Procedia Computer Science

Year:

2019

Language:

english

File:

PDF, 582 KB

english, 2019

19

Organic Rankine Cycle (ORC) in geothermal power plants

Hijriawan, M, Pambudi, N A, Biddinika, M K, Wijayanto, D S, Kuncoro, I W, Rudiyanto, B, Wibowo, K M

Journal:

Journal of Physics Conference Series

Year:

2019

Language:

english

File:

PDF, 1.04 MB

english, 2019

20

Simple functions for describing soil water retention and the unsaturated hydraulic conductivity from saturation to complete dryness

Rudiyanto,, Minasny, Budiman, Shah, Ramisah M., Setiawan, Budi I., van Genuchten, Martinus Th.

Journal:

Journal of Hydrology

Year:

2020

File:

PDF, 8.40 MB

2020

21

Mass Spectrometry-Based Metabolomics Combined with Quantitative Analysis of the Microalgal Diatom (Chaetoceros calcitrans)

Azizan, Awanis, Maulidiani, M., R., Rudiyanto, Shaari, Khozirah, Ismail, Intan Safinar, Nagao, Norio, Abas, Faridah

Journal:

Year:

2020

File:

PDF, 2.35 MB

2020

22

Development of the 2017 national seismic hazard maps of Indonesia

Irsyam, Masyhur, Cummins, Phil R, Asrurifak, M, Faizal, Lutfi, Natawidjaja, Danny Hilman, Widiyantoro, Sri, Meilano, Irwan, Triyoso, Wahyu, Rudiyanto, Ariska, Hidayati, Sri, Ridwan, M, Hanifa, Nuraini

Journal:

Earthquake Spectra

Year:

2020

File:

PDF, 11.62 MB

2020

23

High resolution algorithms for multidimensional population balance equations

Rudiyanto Gunawan, Irene Fusman, Richard D. Braatz

Journal:

Year:

2004

Language:

english

File:

PDF, 223 KB

english, 2004

24

Parallel high-resolution finite volume simulation of particulate processes

Rudiyanto Gunawan, Irene Fusman, Richard D. Braatz

Journal:

Year:

2008

Language:

english

File:

PDF, 187 KB

english, 2008

25

A multiscale systems approach to microelectronic processes

Richard D. Braatz, Richard C. Alkire, Edmund G. Seebauer, Timothy O. Drews, Effendi Rusli, Mohan Karulkar, Feng Xue, Yan Qin, Michael Y.L. Jung, Rudiyanto Gunawan

Journal:

Computers & Chemical Engineering

Year:

2006

Language:

english

File:

PDF, 1.49 MB

english, 2006

26

Circadian rhythm: A natural, robust, multi-scale control system

Francis J. Doyle III, Rudiyanto Gunawan, Neda Bagheri, Henry Mirsky, Tsz Leung To

Journal:

Computers & Chemical Engineering

Year:

2006

Language:

english

File:

PDF, 950 KB

english, 2006

27

Dynamical analysis of cellular networks based on the Green's function matrix

Thanneer M. Perumal, Yan Wu, Rudiyanto Gunawan

Journal:

Journal of Theoretical Biology

Year:

2009

Language:

english

File:

PDF, 880 KB

english, 2009

28

Understanding dynamics using sensitivity analysis: caveat and solution

Thanneer M Perumal, Rudiyanto Gunawan

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 687 KB

english, 2011

29

Comparison of theoretical and computational characteristics of dimensionality reduction methods for large-scale uncertain systems

Rudiyanto Gunawan, Evan L. Russell, Richard D. Braatz

Journal:

Journal of Process Control

Year:

2001

Language:

english

File:

PDF, 210 KB

english, 2001

30

Global parameter estimation methods for stochastic biochemical systems

Suresh Kumar Poovathingal, Rudiyanto Gunawan

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 636 KB

english, 2010

31

Iterative approach to model identification of biological networks

Kapil G Gadkar, Rudiyanto Gunawan, Francis J Doyle

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 530 KB

english, 2005

32

Elucidating Cytochrome c Release from Mitochondria: Insights from an In Silico Three-Dimensional Model

Tam, Zhi Yang, Cai, Yi Hui, Gunawan, Rudiyanto

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 387 KB

english, 2010

33

Sensitivity Analysis of Discrete Stochastic Systems

Gunawan, Rudiyanto, Cao, Yang, Petzold, Linda, Doyle, Francis J.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 239 KB

english, 2005

34

Isochron-Based Phase Response Analysis of Circadian Rhythms

Gunawan, Rudiyanto, Doyle, Francis J.

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 200 KB

english, 2006

35

AIP Conference Proceedings [AIP THE 4TH INTERNATIONAL MEETING OF ADVANCES IN THERMOFLUIDS (IMAT 2011) - Melaka, Malaysia (3–4 October 2011)] - Determination of correlation between backflow volume and mitral valve leaflet young modulus from two dimensional echocardiogram images

Jong, Rudiyanto P., Osman, Kahar, M. Adib, M. Azrul Hisham

Year:

2012

Language:

english

File:

PDF, 1.04 MB

english, 2012

36

Spherical Crystallization of Glycine from Monodisperse Microfluidic Emulsions

Toldy, Arpad I., Badruddoza, Abu Zayed M., Zheng, Lu, Hatton, T. Alan, Gunawan, Rudiyanto, Rajagopalan, Raj, Khan, Saif A.

Journal:

Crystal Growth & Design

Year:

2012

Language:

english

File:

PDF, 341 KB

english, 2012

37

Incremental parameter estimation of kinetic metabolic network models

Gengjie Jia, Gregory Stephanopoulos, Rudiyanto Gunawan

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 512 KB

english, 2012

38

Reduction of kinetic models using dynamic sensitivities

Perumal, Thanneer Malai, Madgula Krishna, Sashikant, Tallam, Sai Sandeep, Gunawan, Rudiyanto

Journal:

Computers & Chemical Engineering

Year:

2013

Language:

english

File:

PDF, 718 KB

english, 2013

39

pathPSA: A Dynamical Pathway-Based Parametric Sensitivity Analysis

Perumal, Thanneer Malai, Gunawan, Rudiyanto

Journal:

Industrial & Engineering Chemistry Research

Year:

2014

Language:

english

File:

PDF, 1.74 MB

english, 2014

40

Caenorhabditis elegans Life Span Studies: The Challenge of Maintaining Synchronous Cohorts

Gruber, Jan, Poovathingal, Suresh Kumar, Schaffer, Sebastian, Ng, Li Fang, Gunawan, Rudiyanto, Halliwell, Barry

Journal:

Rejuvenation Research

Year:

2010

Language:

english

File:

PDF, 528 KB

english, 2010

41

[IEEE 2010 International Conference on Science and Social Research (CSSR) - Kuala Lumpur, Malaysia (2010.12.5-2010.12.7)] 2010 International Conference on Science and Social Research (CSSR 2010) - Analysis of blood flow into the main artery via mitral valve: Fluid structure interaction model

Mohd Adib, Mohd Azrul Hisham, Osman, Kahar, Jong, Rudiyanto Philman

Year:

2010

Language:

english

File:

PDF, 448 KB

english, 2010

42

Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network

Taylor, Stephanie R., Gunawan, Rudiyanto, Petzold, Linda R., Doyle III, Francis J.

Journal:

IEEE Transactions on Automatic Control

Year:

2008

Language:

english

File:

PDF, 908 KB

english, 2008

43

IDENTIFICATION OF KINETIC PARAMETERS IN MULTIDIMENSIONAL CRYSTALLIZATION PROCESSES

GUNAWAN, RUDIYANTO, MA, DAVID L., FUJIWARA, MITSUKO, BRAATZ, RICHARD D.

Journal:

International Journal of Modern Physics B

Year:

2002

Language:

english

File:

PDF, 731 KB

english, 2002

44

Parameter estimation of dynamic biological network models using integrated fluxes

Liu, Yang, Gunawan, Rudiyanto

Journal:

BMC Systems Biology

Year:

2014

Language:

english

File:

PDF, 891 KB

english, 2014

45

Stochastic Drift in Mitochondrial DNA Point Mutations: A Novel Perspective Ex Silico

Poovathingal, Suresh Kumar, Gruber, Jan, Halliwell, Barry, Gunawan, Rudiyanto, Bader, Joel S.

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 671 KB

english, 2009

46

Context-Dependent Role of Mitochondrial Fusion-Fission in Clonal Expansion of mtDNA Mutations

Tam, Zhi Yang, Gruber, Jan, Halliwell, Barry, Gunawan, Rudiyanto, Morozov, Alexandre V

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

47

Using dynamic sensitivities to characterize metabolic reaction systems

Sriyudthsak, Kansuporn, Uno, Harumi, Gunawan, Rudiyanto, Shiraishi, Fumihide

Journal:

Mathematical Biosciences

Year:

2015

Language:

english

File:

PDF, 2.06 MB

english, 2015

48

REDEMPTION: reduced dimension ensemble modeling and parameter estimation: Fig. 1.

Liu, Yang, Manesso, Erica, Gunawan, Rudiyanto

Journal:

Year:

2015

Language:

english

File:

PDF, 171 KB

english, 2015

49

Optimal design of gene knockout experiments for gene regulatory network inference

Ud-Dean, S. M. Minhaz, Gunawan, Rudiyanto

Journal:

Year:

2016

Language:

english

File:

PDF, 691 KB

english, 2016

50

Inferring gene targets of drugs and chemical compounds from gene expression profiles

Noh, Heeju, Gunawan, Rudiyanto

Journal:

Year:

2016

Language:

english

File:

PDF, 433 KB

english, 2016